PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G29800.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 156aa MW: 16293 Da PI: 10.2317

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G29800.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	3.9e-31	94	152	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs+fpr+YYrC+s+ gCp++k+vers++dp++v++tY+ eHnh+ OBART01G29800.1 94 TDSWAWRKYGQKPIKGSPFPRAYYRCSSSkGCPARKQVERSRNDPDTVIVTYSFEHNHS 152 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	31.204	88	154	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.8E-31	90	153	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	91	153	IPR003657	WRKY domain
SMART	SM00774	2.9E-36	93	153	IPR003657	WRKY domain
Pfam	PF03106	9.6E-27	95	151	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MDGEWSDGAA VSSPTMSGGG GREQMKGGED VAAADCPGSP VSPSPAAAQR SAAGAAASPS 60 GRSRRSAQKR VVTVPLADVT GPRPKGVGEG NTPTDSWAWR KYGQKPIKGS PFPRAYYRCS 120 SSKGCPARKQ VERSRNDPDT VIVTYSFEHN HSATSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-19	66	151	3	76	Disease resistance protein RRS1
5w3x_D	4e-19	66	151	3	76	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109770	0.0	AK109770.1 Oryza sativa Japonica Group cDNA clone:002-147-A06, full insert sequence.
GenBank	AY870603	0.0	AY870603.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624912.1	1e-106	probable WRKY transcription factor 65
Swissprot	Q9LP56	5e-41	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A0D3ETN1	1e-108	A0A0D3ETN1_9ORYZ; Uncharacterized protein
STRING	OBART01G29800.1	1e-108	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10947	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	7e-39	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]