PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G29960.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 254aa MW: 27815.3 Da PI: 7.0533

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G29960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.5	1.2e-32	175	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+ OBART01G29960.1 175 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 233 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-33	161	233	IPR003657	WRKY domain
SuperFamily	SSF118290	9.15E-29	167	234	IPR003657	WRKY domain
PROSITE profile	PS50811	28.885	170	235	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	175	234	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	176	233	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MENLQLQGDD HDDEALPHFP YFAVPSPPPL AVAPAASATT SDGRQHGPLE VLEQPPCSNN 60 LHPDGLVDGP QLAATTAVPM MLPAMTSLDW QSLLQTCLQV PPPVLEQQQP AAAAQADQYS 120 GENDHGDLQA AESSGAGNKE KQVMAKGGAG RPSGTKKKAS RPRFAFQTRS DNDILDDGYR 180 WRKYGQKAVK NSKHPRSYYR CTHHTCNVKK QVQRLAKDTS IVVTTYEGVH NHPCEKLMEA 240 LTPILKQLQF LSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	165	232	7	74	Probable WRKY transcription factor 4
2lex_A	3e-24	165	232	7	74	Probable WRKY transcription factor 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108909	0.0	AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBank	AY341845	0.0	AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBank	AY870607	0.0	AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876574.1	0.0	probable WRKY transcription factor 24
TrEMBL	A0A0D3ETQ0	0.0	A0A0D3ETQ0_9ORYZ; Uncharacterized protein
TrEMBL	I1NRG7	0.0	I1NRG7_ORYGL; Uncharacterized protein
STRING	ORGLA01G0245700.1	0.0	(Oryza glaberrima)
STRING	OBART01G29960.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1100	38	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	2e-57	WRKY DNA-binding protein 24