PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G31310.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 221aa    MW: 24052.7 Da    PI: 7.0989
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G31310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-1194135445
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                       kr +r   NR +A+rsR RK+++i eLe+ v +L++e + L
  OBART01G31310.1  94 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVL 135
                      5999*********************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-1491155IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.79593145IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.06E-1295149No hitNo description
Gene3DG3DSA:1.20.5.1708.4E-1495149No hitNo description
PfamPF001707.5E-1095140IPR004827Basic-leucine zipper domain
CDDcd147032.57E-2396147No hitNo description
PROSITE patternPS00036098113IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAQLPPKIPV AAPGHHQHWA SGGEFDRLDD DQLMSMFPDE GGSSAPGSDN GGSDSDGGGD  60
KHAAAQSDDG QHAAGEPTQE QAAATSPTEL IRDPKRVKRI LANRQSAQRS RVRKLQYISE  120
LERSVTTLQN EVSVLSPRVA FLDQQRTILT VGNSHLKQRI AALAQDKIFK DAHQEALRKE  180
IERLRQVYQQ QNTKLSGGLA ADHAHVHGGP PPVRAEKELM S
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1085530.0AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634100.11e-152basic leucine zipper 6 isoform X1
SwissprotQ5JMK61e-153BZP06_ORYSJ; Basic leucine zipper 6
TrEMBLA0A0D3EU491e-160A0A0D3EU49_9ORYZ; Uncharacterized protein
STRINGOBART01G31310.11e-161(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132238125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.11e-56bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]