PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G31310.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 149aa MW: 16347.9 Da PI: 7.2586

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G31310.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32	2.6e-10	94	129	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 kr +r NR +A+rsR RK+++i eLe+ v +L+ OBART01G31310.2 94 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQ 129 5999****************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00170	5.7E-9	95	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-8	95	131	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.8E-10	95	129	No hit	No description
CDD	cd14703	1.02E-16	96	129	No hit	No description
PROSITE pattern	PS00036	0	98	113	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MAQLPPKIPV AAPGHHQHWA SGGEFDRLDD DQLMSMFPDE GGSSAPGSDN GGSDSDGGGD 60 KHAAAQSDDG QHAAGEPTQE QAAATSPTEL IRDPKRVKRI LANRQSAQRS RVRKLQYISE 120 LERSVTTLQV YIHIRAIRTY QRRQHQTQN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108553	1e-180	AK108553.1 Oryza sativa Japonica Group cDNA clone:002-144-E08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634100.1	4e-65	basic leucine zipper 6 isoform X1
Refseq	XP_025876860.1	3e-65	basic leucine zipper 6 isoform X2
Swissprot	Q5JMK6	3e-66	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A0D3EU50	1e-105	A0A0D3EU50_9ORYZ; Uncharacterized protein
STRING	OBART01G31310.1	4e-76	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	5e-20	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]