PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G32730.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 218aa MW: 23868 Da PI: 5.1728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G32730.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.1e-12	42	91	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +rEr RR+r+ ++++ L+ +lP+ a +s K K +i+ A +YI++L+ OBART01G32730.1 42 RHIMRERLRRERLSQGYADLQAILPTgA---SSSKGGKNTIVAAAANYIRELE 91 599*********************88...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-14	36	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.427	38	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-10	40	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-9	42	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.4E-8	44	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MHRFLRSIYD DAGDDAGATA EMQPAEGEQQ QAAPSGGSAR FRHIMRERLR RERLSQGYAD 60 LQAILPTGAS SSKGGKNTIV AAAANYIREL EGRKGWLCAQ NELLERTTPK PGAGMVVKVR 120 AESELGSTVD VFEAVLRRLK AMDELQVTAI QSWFGAGGMW MDVAVESKIS SREVDKAITN 180 ALKELQEIEY SEYSCLQDPM RSGTSFSCQV ESGVLLMS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	52	RLRRER

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003265	1e-158	AP003265.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0490D09.
GenBank	AP014957	1e-158	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-158	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635057.1	1e-160	transcription factor BHLH148-like
TrEMBL	A0A0D3EUM8	1e-159	A0A0D3EUM8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N362	1e-158	A0A0E0N362_ORYRU; Uncharacterized protein
STRING	ORUFI01G35930.1	1e-159	(Oryza rufipogon)
STRING	OBART01G32730.1	1e-160	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12730	24	32