PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G34430.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 448aa    MW: 49298.3 Da    PI: 7.3944
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G34430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1315.6e-10163197539
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 
                      k  rr+++NReAAr+sR+RKka+i++Le    +L+
  OBART01G34430.1 163 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLT 197
                      788*************************8655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-7159222IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.117161205IPR004827Basic-leucine zipper domain
PfamPF001702.5E-7163198IPR004827Basic-leucine zipper domain
CDDcd147087.73E-22163215No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-7164207No hitNo description
SuperFamilySSF579594.36E-7164207No hitNo description
PROSITE patternPS000360166181IPR004827Basic-leucine zipper domain
PfamPF141443.6E-32245320IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSGFAAPQHA IHTNLNNVQP TQVTDFGALA QSAGFRIEDL ANLSTNGLFN LKSNAHTIIN  60
DPLQFENYVK SISPSNITTT ATVTVVDPQT LVPQKGAQLN LVTIRTGNVE NWGESTIADT  120
SPRTDTSTDP DTDERNQMFE QGQLAAPTAS DSSDRSKDKL DHKTLRRLAQ NREAARKSRL  180
RKKAYIQNLE SSRLKLTQIE QELQRARQQG IFISTSSDQS HSASGNGALA FDMEYARWLE  240
EHNKHINELR AAVNAHAGDN DLKSTVDSIM AHYNEIFKLK GVAAKADVFH VLSGMWKTPA  300
ERCFMWLGGF RSSELLKLLA GQLEPLTEQQ LAGIANLQQS SQQAEDALSQ GMEALQQSLA  360
ETLASGSLGP AGSSGNVANY MGQMAMAMGK LGTLENFLRQ ADNLRLQTLQ QMQRILTTRQ  420
SARALLAISD YFSRLRALSS LWLARPRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6204150.0AY620415.1 Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651146.10.0transcription factor TGAL1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLB8ABC10.0B8ABC1_ORYSI; Uncharacterized protein
STRINGORUFI01G37800.10.0(Oryza rufipogon)
STRINGONIVA01G39320.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-149bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]