PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G35310.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 231aa    MW: 25389.9 Da    PI: 8.089
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G35310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.83.4e-2171131359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 
                      Dg  WrKYGqK++k+s fpr YYrC+++   +C + k v++++ +dp +  +tY+ eH+++
  OBART01G35310.1  71 DGQLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYRVTYTYEHTCN 131
                      8899***********************99999*******987516899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-2261131IPR003657WRKY domain
SuperFamilySSF1182901.57E-2164132IPR003657WRKY domain
SMARTSM007741.4E-3269132IPR003657WRKY domain
PROSITE profilePS5081115.65271133IPR003657WRKY domain
PfamPF031062.8E-2371130IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASPRLKREQ SFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS  60
LVKHTFTPHF DGQLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY  120
RVTYTYEHTC NTTPVPTPDV VAEQPPPGAA GDAYLLRFGS SAGGGGGGAH QQQTERERQQ  180
QNTARRRPFM MLSFDSSSSH QLHEQPHAFP PDGQLPATAA AASPSSFTAA E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-16711301068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156RKRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0033020.0AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11.
GenBankAP0033480.0AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644112.11e-168probable WRKY transcription factor 2
TrEMBLA0A0D3EVK91e-169A0A0D3EVK9_9ORYZ; Uncharacterized protein
STRINGOBART01G35310.11e-170(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-19WRKY DNA-binding protein 38