PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G35380.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 244aa    MW: 25683.7 Da    PI: 7.9716
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G35380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.61.8e-2177138258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-S..SST.TEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversa..edp.kvveitYegeHnh 58 
                       Dg+ WrKYGqKe++g ++pr YYrC+++  gC ++++v++s+  +dp  +++i Y geH++
  OBART01G35380.1  77 TDGFIWRKYGQKEINGCKHPRLYYRCAFRgqGCLATRRVQQSQsqDDPaAAFVIAYYGEHTC 138
                      6***************************9999********87621455257899******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2269138IPR003657WRKY domain
PROSITE profilePS5081116.90371136IPR003657WRKY domain
SuperFamilySSF1182902.22E-2072139IPR003657WRKY domain
SMARTSM007743.6E-2976140IPR003657WRKY domain
PfamPF031061.3E-2278138IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MAMLGSSSAV ILRCCDRVIA KLNRGGATGA TTGKKRKAAE SAAAAAAVTS PSLPVTPTKR  60
RARGAEAVRE VRSGTTTDGF IWRKYGQKEI NGCKHPRLYY RCAFRGQGCL ATRRVQQSQS  120
QDDPAAAFVI AYYGEHTCGG DAAAAAACRD GELMPPAVIN SGASSFAAAW NMASREPVSS  180
LAVERRSCDG DAPSETSQGW SPSFSSEVEL DVVGFDLAGA DSSASPVWEF LNGSFDWESV  240
INSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-14781381068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086570.0AK108657.1 Oryza sativa Japonica Group cDNA clone:002-148-E07, full insert sequence.
GenBankAY8706060.0AY870606.1 Oryza sativa (japonica cultivar-group) WRKY21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621234.11e-159probable WRKY transcription factor 30
TrEMBLA0A0D3EVL61e-177A0A0D3EVL6_9ORYZ; Uncharacterized protein
STRINGOBART01G35380.11e-178(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.11e-15WRKY DNA-binding protein 46