PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G36810.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 782aa    MW: 86780.7 Da    PI: 6.3966
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G36810.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS387.12e-1184067752374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+ v+++d + a++lL++++++a  +gd  qRla++f+++L+arla+++s++yk  + ++ +    +++l+a++l+  ++P+ k+sh
  OBART01G36810.1 406 ETLLIHCAQSVATDDRRSATELLKQIRQHAHANGDGDQRLAHCFANGLEARLAGTGSQIYKNYTITRLP---CTDVLKAYQLYLAACPFKKISH 496
                      789************************************************************999999...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                        aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ +a+r+e
  OBART01G36810.1 497 YFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERTEETGRYLSDYAQTFNVPFEFQA-IASRFE 589
                      ***************************************************************************************.7***** PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                      ++++e+L+++++E+l+Vn++++ ++l+desv  es+r+  Lk++++++P+v+++   + ++n++ F++rf eal +ysa+fd+le+++p+++e+
  OBART01G36810.1 590 AVRMEDLHIEEDEVLIVNCMFKFKNLMDESVVAESPRNMALKTIRKMNPHVFIHGVVNGSYNAPFFVTRFREALFHYSAIFDMLETNIPKDNEQ 683
                      ********************************************************************************************** PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      r  +E +l++re+ nv++ceg er er et+++W+ r +++GFk++pl+++++k a+  +r +++d + ++e++ +l++gWk+r L+++S W+
  OBART01G36810.1 684 RLLIESALFSREAINVISCEGLERMERPETYKQWQVRNQRVGFKQLPLNQDMMKRAREKVRCYHKD-FIIDEDNRWLLQGWKGRILFALSTWK 775
                      ****************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.115379756IPR005202Transcription factor GRAS
PfamPF035146.9E-116406775IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MLCGGGRVVG GGGYRWSWML GCTTCARCCP EPISAASTNG ASPPRDVSVS ASAASSAAAQ  60
HDDSEAFSDI VLGYINRMLM AEDIDEKFEH YPVNADDLLA AEKPFLEILA DQSPYSGGSS  120
VESPDGSSAA NSCNSLSPCN CSSSSDGLGA VPQTPVLEFP TAAFSQTPQL YGDLIPTGGM  180
VESGGAWPYD PTEFYQLQTK PVRENLLSQS SSFASSNGSS VTFSEGFESL LSPAGVLPDV  240
SLNDFVVQNQ QALQFRRGFQ EASKFLPDES KLVIDVDKLY SGDEGSRFLG EVRQETKLVK  300
VKTETSDVES AGHRGKKHFY GDDLDAEEGR CSKHSAQGID TDHLVRDLMD KVLLCNGETC  360
SKGVKELREA LQHDVAKHSG GGHGKGSSHG KGRGKKQPKK EVVDLETLLI HCAQSVATDD  420
RRSATELLKQ IRQHAHANGD GDQRLAHCFA NGLEARLAGT GSQIYKNYTI TRLPCTDVLK  480
AYQLYLAACP FKKISHYFAN QTILNAVEKA KKVHIVDYGI YYGFQWPCLI QRLSNRPGGP  540
PKLRITGIDT PQPGFRPAER TEETGRYLSD YAQTFNVPFE FQAIASRFEA VRMEDLHIEE  600
DEVLIVNCMF KFKNLMDESV VAESPRNMAL KTIRKMNPHV FIHGVVNGSY NAPFFVTRFR  660
EALFHYSAIF DMLETNIPKD NEQRLLIESA LFSREAINVI SCEGLERMER PETYKQWQVR  720
NQRVGFKQLP LNQDMMKRAR EKVRCYHKDF IIDEDNRWLL QGWKGRILFA LSTWKPDNRS  780
SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-514097758375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412GGRVVGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032400.0AP003240.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0406G08.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619294.10.0scarecrow-like protein 9 isoform X1
TrEMBLA0A0D3EW310.0A0A0D3EW31_9ORYZ; Uncharacterized protein
STRINGOBART01G36810.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-176GRAS family protein