PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G36870.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 190aa    MW: 20413.8 Da    PI: 9.1356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G36870.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.32.3e-11161182223
                      --SS-EEEEEEE--TT-SS-EE CS
             WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                       Dgy+WrKYGqK++k++++pr 
  OBART01G36870.1 161 ADGYKWRKYGQKSIKNNPHPRC 182
                      6*******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-10157183IPR003657WRKY domain
SuperFamilySSF1182907.98E-9158182IPR003657WRKY domain
SMARTSM007749.4E-5160190IPR003657WRKY domain
PROSITE profilePS5081112.059162190IPR003657WRKY domain
PfamPF031064.1E-8162182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MYGQSPHKQR RRFPGPYLMG DVLRAQATAS AEEVAGGVWP CELDDHLIGE LLGDDGLFVP  60
AAEHPTLYYS FGAGSSAAAA AAPCNGGGSA DHERRPRPAP AVSRDLCSVY SGPTIRDIEK  120
ALSSSASPRP PYPSGRRYSS LVEAESKYTS KVRSCGGKMP ADGYKWRKYG QKSIKNNPHP  180
RCATRNSSDL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8355090.0CT835509.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014N20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635485.11e-118WRKY transcription factor WRKY28
TrEMBLA0A0D3EW371e-136A0A0D3EW37_9ORYZ; Uncharacterized protein
STRINGOBART01G36870.11e-137(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131442633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.12e-11WRKY DNA-binding protein 49