PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G37260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 547aa    MW: 58734.9 Da    PI: 8.7078
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G37260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.7e-103253621954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  OBART01G37260.1 325 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 362
                      554459******************************88 PP
2BELL97.51.1e-31189258372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  OBART01G37260.1 189 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 258
                      5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-35114256IPR006563POX domain
PfamPF075261.6E-36119254IPR006563POX domain
PROSITE profilePS5007112.228303366IPR001356Homeobox domain
SMARTSM003897.4E-11306370IPR001356Homeobox domain
CDDcd000862.06E-13306367No hitNo description
SuperFamilySSF466893.46E-17308375IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28309370IPR009057Homeodomain-like
PfamPF059205.7E-19323362IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSSAAGGGGS RRTPGTRHRL MVMVMQQQQH GSWPPPPAFY SYASSSSSYS PHSPTLAQAQ  60
LVAHGLAPPL PQIPTQNFSL SLSSASSNPP PPQAQPRRQL GGLAQATGPF GPFTGYAAVL  120
GRSRFLGPAE KLFEEICDVG GAASHVDRTI SDEGLLDADP MDGVDHDVVD HDLGGADRAA  180
ADAGPISGAE QQWKKTKLIS MMEEVCKRYR QYYQQVQAVM ASFETVAGFS NAAPFAALAL  240
RAMAKHFKCL KSMILNQLRN TSNKVAVKDG LNKEIAVFGL AGGSSGGAGL QRANSASAFG  300
QPHNIWRPQR GLPERAVSVL RAWLFEHFLH PYPTDGDKQM LAKQTGLTRN QVSNWFINAR  360
VRLWKPMVEE IHNLEMRQMH KHSVVDKGQH SVHHQAQHSS QCSGNPSVPS DSHPGQSSSI  420
TRNHNTAASQ GFPDELSQMS QSIQGQVSFA YNGLTSQHNI ASPHHQHQQV GGVGIGGGNG  480
GVSLTLGLHQ NNRVCIAEPL PAALPANLAH RFGLEEVSDA YVMSSFGGQD RHFGKEIGGH  540
LLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-17312369158Homeobox protein Meis1
4xrs_B8e-17312369158Homeobox protein Meis1
5bng_A9e-17312370159Homeobox protein Meis2
5bng_B9e-17312370159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713300.0AB071330.1 Oryza sativa Indica Group qSH-1 mRNA for qSH-1, complete cds.
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641948.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0D3EW880.0A0A0D3EW88_9ORYZ; Uncharacterized protein
STRINGOBART01G37260.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-58BEL1-like homeodomain 8