PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G38370.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 884aa MW: 95480.9 Da PI: 6.1491

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G38370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	687	724	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq OBART01G38370.1 687 RQMIQDRIKELREIVPNS-----AKCSIDTLLEKTIKHMLFLQ 724 77899**********6.....5899999*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	6.5E-19	7	157	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	4.09E-4	668	725	No hit	No description
PROSITE profile	PS50888	10.594	674	723	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-5	687	729	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.6E-5	687	728	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010078	Biological Process	maintenance of root meristem identity
GO:0010089	Biological Process	xylem development
GO:0010479	Biological Process	stele development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 884 aa Download sequence Send to blast
MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA 60 MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHGHDRVD ALVHKAMAQQ VHVVGEGVIG 120 QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST 180 AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY NDDMINHQFR HQKSPASTIQ 240 SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS 300 NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKV 360 DDLLSQDCLV DCQASNATSM NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TRYSDCFQSL 420 LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN 480 DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA 540 IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT 600 EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC 660 KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID TLLEKTIKHM 720 LFLQNVAKHA DKLKESGEPK IVSQEEGLLL KDNFEGGATW AFEVGTRSMT CPIIVEDLNP 780 PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD KIWARFAVEA NKDVTRMEIF 840 LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF SNCL

Sequence ? help Back to Top

Protein Sequence Length: 884 aa Download sequence Send to blast

MAGAAPLRDS LRRLCTDVGW SYAVFWRATR AADSQRLKLV WGDGHYERAA GAPSISGFEA  60
MDLLLKEKAA ALRSGTGRGG GGGEGHAADG AAGHGHDRVD ALVHKAMAQQ VHVVGEGVIG  120
QAALTGLHRW IVHDIVDECE EEDEVLLEMK GQFCAGIQVM EEAAFIDHVR SLFQQLGSST  180
AVVPCGSFVQ DSIMRTPFHK SLGVPTSSHS EDLAGGGNTY NDDMINHQFR HQKSPASTIQ  240
SFNPVQQFYA GPTFCRPVTI ASRCDLFQPD HGSTFTLNSQ SEDNRSTALL KNSVSHSKTS  300
NDAFSHAFNP LNEPNVSISG RRECVSIEQH GSCRNGEMEI TIGRTASSSC TGKTNIINKV  360
DDLLSQDCLV DCQASNATSM NRKFQTMSIV DNTKLQDGSY AIPHAALVDS TRYSDCFQSL  420
LGTIQGSSSS NSNAIHVDTS HNAVHGKSNF CPLGDRNAAN SSDLAELLAS PIPLELTGGN  480
DLFDVLQLQQ KPNGSNNSEV NNRQSMPYGS EQAVKSLIGC VDDDFTGLIT EADPDQLLDA  540
IVSKIITGHK QNVDTSASCS TTVAGFDRPL HSDCHLYTTG PSSGPIFCNF ASVAPVAIKT  600
EGPAAGSRQS SSSIDKSAGC SQTQESYKSQ IRLWVENNHS VGSDSLSTGQ ASDSLSTGQC  660
KRSDEIGKSN RKRSRPGESA RPRPKDRQMI QDRIKELREI VPNSAKCSID TLLEKTIKHM  720
LFLQNVAKHA DKLKESGEPK IVSQEEGLLL KDNFEGGATW AFEVGTRSMT CPIIVEDLNP  780
PRQMLVEMLC KERGIFLEIA DQIRGLGLTI LKGVMEVRKD KIWARFAVEA NKDVTRMEIF  840
LSLVHLLEPS TGSSILSAGV ENTSLPRDSF FPSSIPATGF SNCL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068033	0.0	AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619837.1	0.0	transcription factor LHW isoform X4
TrEMBL	A0A0D3EWN6	0.0	A0A0D3EWN6_9ORYZ; Uncharacterized protein
STRING	OBART01G38370.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16189	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-55	conserved peptide upstream open reading frame 7