PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G38510.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 190aa MW: 20809.1 Da PI: 10.1261

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G38510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.4e-15	108	160	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN ++ ke ee ++ OBART01G38510.1 108 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAKMFKEQEEQHQK 160 689*************************************9998877654444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-8	106	170	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	108	172	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.8E-14	108	166	IPR004827	Basic-leucine zipper domain
CDD	cd14707	5.47E-20	110	160	No hit	No description
SuperFamily	SSF57959	3.06E-11	110	160	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-13	111	169	No hit	No description
PROSITE pattern	PS00036	0	113	128	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNVEEILRGI YADMPTPALP LVGGDRPMSP LPVPDVAAAP RTAEEVWKEI TGAGVAAAAG 60 GVVPPAAAAA AAPAVVVMGF LNGAEVTGGV TGGRSRKRHL MDPMDRAAMQ RQKRMIKNRE 120 SAARSRERKQ AYIAELESLV TQLEEENAKM FKEQEEQHQK RLKELKEMVV PVIIRKTSAR 180 DLRRTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067919	0.0	AK067919.1 Oryza sativa Japonica Group cDNA clone:J013123H12, full insert sequence.
GenBank	GQ904238	0.0	GQ904238.1 Oryza sativa Japonica Group ABA responsive element binding factor 1 mRNA, complete cds.
GenBank	OSU25283	0.0	U25283.1 Oryza sativa clone OSE2 leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	1e-109	bZIP transcription factor 12-like
Swissprot	Q0JHF1	1e-110	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0D3EWQ1	1e-133	A0A0D3EWQ1_9ORYZ; Uncharacterized protein
STRING	ORGLA01G0323500.1	1e-109	(Oryza glaberrima)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44080.1	2e-30	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]