PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G38510.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 230aa MW: 24711.3 Da PI: 6.5773

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G38510.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.7e-15	148	200	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN ++ ke ee ++ OBART01G38510.2 148 AMQRQKRMIKNRESAARSRERKQAYIAELESLVTQLEEENAKMFKEQEEQHQK 200 689*************************************9998877655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.6E-8	146	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-14	148	206	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.657	148	212	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.99E-20	150	200	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.9E-13	151	209	No hit	No description
SuperFamily	SSF57959	7.5E-11	151	198	No hit	No description
PROSITE pattern	PS00036	0	153	168	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MNVEEILRGI YADMPTPALP LVGGDRPMSP LPVPDVAAAP RTAEEVWKEI TGAGVAAAAG 60 GVVPPAAAAA AAPAVVAGAG AGTGAEMTLE DFLAREGAVK EDEAVVTDPS AAKGQVVMGF 120 LNGAEVTGGV TGGRSRKRHL MDPMDRAAMQ RQKRMIKNRE SAARSRERKQ AYIAELESLV 180 TQLEEENAKM FKEQEEQHQK RLKELKEMVV PVIIRKTSAR DLRRTNSMEW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067919	0.0	AK067919.1 Oryza sativa Japonica Group cDNA clone:J013123H12, full insert sequence.
GenBank	GQ904238	0.0	GQ904238.1 Oryza sativa Japonica Group ABA responsive element binding factor 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	1e-163	bZIP transcription factor 12-like
Swissprot	Q0JHF1	1e-164	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	I1NTP5	1e-163	I1NTP5_ORYGL; Uncharacterized protein
STRING	ORGLA01G0323500.1	1e-163	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2665	37	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	5e-33	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]