PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART01G40850.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRAS

Protein Properties

Length: 231aa MW: 25861.5 Da PI: 7.1308

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART01G40850.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	208.6	3.4e-64	18	230	158	374
GRAS 158 leetgerLakfAeelgv.pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250 ++ g+ L+ +Ae lg+ +ef++ v ++le+l++e+L ++ +Ea+a+n+vl+lh +++e+ + +vL++++ lsP+ +v+veq+a hn+ OBART01G40850.1 18 ARASGRELEAYAEGLGMmYLEFRA-VDRSLESLHIEDLGIDADEAVAINSVLELHPVVKENRGALN---SVLQTIRMLSPRAFVLVEQDAGHNG 107 5778999******97269.799*************************987766666...8******************** PP GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 + Fl rf+eal+yy+alfd+l+a+lpr r+ vE++ +g ei+nvv ega+r+erhe++ +Wr+r+++aGF++vp + aak + l+++ OBART01G40850.1 108 PFFLGRFMEALQYYAALFDALDAELPRYGARRARVEQFHFGTEIRNVVGWEGAARVERHERADQWRRRMSRAGFQSVPTK-MAAKAREWLVENA 200 **************************************************************************86.5667789999999 PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++dgy+v ee+g+lvlgWk++p++++S+W+ OBART01G40850.1 201 GGDGYTVAEEKGCLVLGWKGKPVIAASCWK 230 9**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.978	1	211	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-61	18	230	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGLDRGHRWR GLLDGLAARA SGRELEAYAE GLGMMYLEFR AVDRSLESLH IEDLGIDADE 60 AVAINSVLEL HPVVKENRGA LNSVLQTIRM LSPRAFVLVE QDAGHNGPFF LGRFMEALQY 120 YAALFDALDA ELPRYGARRA RVEQFHFGTE IRNVVGWEGA ARVERHERAD QWRRRMSRAG 180 FQSVPTKMAA KAREWLVENA GGDGYTVAEE KGCLVLGWKG KPVIAASCWK C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-27	17	229	171	378	Protein SCARECROW
5b3h_A	1e-27	17	229	170	377	Protein SCARECROW
5b3h_D	1e-27	17	229	170	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003791	0.0	AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBank	AP006757	0.0	AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBank	AP014957	0.0	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	0.0	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814052.1	1e-141	DELLA protein RGL1-like
TrEMBL	A0A0D3EXI7	1e-167	A0A0D3EXI7_9ORYZ; Uncharacterized protein
STRING	OBART01G40850.1	1e-168	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	8e-44	RGA-like 1