PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G40860.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 104aa    MW: 11653.4 Da    PI: 10.6999
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G40860.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS30.83.7e-101710228118
             GRAS  28 selaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd 118
                      ++++ p+++++qR+a++f++ L  r a+++ + ++     ++     + +  a++      P+l f+h++aN   l+a+ege+  H++D++
  OBART01G40860.1  17 RQRCRPARRAFQRVASFFVQELLDRRASTGAGPCEHGVLHPA-----VVVREARRRARRGAPYLWFAHFLANACTLQAFEGESNDHVVDLG 102
                      467789999************999999956555554444444.....4555677788999*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.5941104IPR005202Transcription factor GRAS
PfamPF035141.3E-717102IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MRLAQLLVAC AEAVAPRQRC RPARRAFQRV ASFFVQELLD RRASTGAGPC EHGVLHPAVV  60
VREARRRARR GAPYLWFAHF LANACTLQAF EGESNDHVVD LGWV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037911e-89AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067571e-89AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149571e-89AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646199.12e-17DELLA protein RGL1
TrEMBLA0A0D3EXI83e-68A0A0D3EXI8_9ORYZ; Uncharacterized protein
STRINGOBART01G40860.14e-69(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354