PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G40880.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 142aa    MW: 15373.5 Da    PI: 10.7055
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G40880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.59.5e-2089138251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                      rie k+ rqvt  k rng+l K +EL +LCdae+ +iifs++g+lye+s+
  OBART01G40880.1  89 RIERKTSRQVTSGKHRNGLLNKTYELAILCDAEIGLIIFSTRGRLYEFSN 138
                      89**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
PROSITE profilePS5006623.22680140IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-1880139IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-2182102IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-1883138IPR002100Transcription factor, MADS-box
PfamPF003193.9E-1889136IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-21102117IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-21117138IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MYGKYATRWN AVPCTGAPAY SVAACARSQH TPPPQRRRPE AARAASRQLL PSSATVTATA  60
TVTTNPLTLT SRSGAVAASP GDRLIDIGRI ERKTSRQVTS GKHRNGLLNK TYELAILCDA  120
EIGLIIFSTR GRLYEFSNEI QI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037912e-91AP003791.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1065G12.
GenBankAP0067572e-91AP006757.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0551C06.
GenBankAP0149572e-91AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3EXJ14e-99A0A0D3EXJ1_9ORYZ; Uncharacterized protein
STRINGOBART01G40880.11e-100(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.27e-22MIKC_MADS family protein