PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G42420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 228aa    MW: 24485.6 Da    PI: 8.8376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G42420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.75.8e-33211451128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratk.sgyWkatgkdkev 92 
                      lp GfrF+Ptdeel+ +yL++kv +++l++ +vi+ +d+ +++PwdLp    +++ e yfF+  +++   +g   +ra    g W+a+gk+k v
  OBART01G42420.1  21 LPIGFRFRPTDEELLLHYLRRKVMSRPLPA-DVIPVADLAHLHPWDLP---GEGDGERYFFHLPATSCWrRGGGGSRAGGgGGAWRASGKEKLV 110
                      699***************************.99***************...346778999998887776258888886443899********** PP

              NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++   +++ vg k+tLvf+   ++ g +tdW mheyrl
  OBART01G42420.1 111 VAPrcGKRPVGAKRTLVFF---RRGGARTDWAMHEYRL 145
                      *99888999**********...567889********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-4515167IPR003441NAC domain
PROSITE profilePS5100544.73121167IPR003441NAC domain
PfamPF023659.7E-2122145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAAEAASGGG GGYRMLPQAG LPIGFRFRPT DEELLLHYLR RKVMSRPLPA DVIPVADLAH  60
LHPWDLPGEG DGERYFFHLP ATSCWRRGGG GSRAGGGGGA WRASGKEKLV VAPRCGKRPV  120
GAKRTLVFFR RGGARTDWAM HEYRLLPADD HPPEANDVWV VCRVFKKTTT LAHRRSPPSI  180
RGAPRRRAAA ADDDDMPSSP SSCVTDGGDA GEEGEESSSC SVVASNCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-271617015171NAC domain-containing protein 19
3swm_B9e-271617015171NAC domain-containing protein 19
3swm_C9e-271617015171NAC domain-containing protein 19
3swm_D9e-271617015171NAC domain-containing protein 19
3swp_A9e-271617015171NAC domain-containing protein 19
3swp_B9e-271617015171NAC domain-containing protein 19
3swp_C9e-271617015171NAC domain-containing protein 19
3swp_D9e-271617015171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0674500.0AK067450.1 Oryza sativa Japonica Group cDNA clone:J013106M04, full insert sequence.
GenBankAK0684460.0AK068446.1 Oryza sativa Japonica Group cDNA clone:J013153H06, full insert sequence.
GenBankAK2889420.0AK288942.1 Oryza sativa Japonica Group cDNA, clone: J090083D07, full insert sequence.
GenBankCT8295910.0CT829591.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA017E23, full insert sequence.
GenBankCT8295920.0CT829592.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA111B01, full insert sequence.
GenBankCU4067440.0CU406744.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109J05, full insert sequence.
GenBankGU1203510.0GU120351.1 Oryza sativa Japonica Group clone KCG153D01 NAC4 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627804.11e-163NAC domain-containing protein 83
TrEMBLA0A0D3EY321e-163A0A0D3EY32_9ORYZ; Uncharacterized protein
STRINGOBART01G42420.11e-164(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-31NAC domain containing protein 83