PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G42530.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 284aa    MW: 29959.7 Da    PI: 11.0175
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G42530.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49.2e-242394171
         trihelix  1 rWtkqevlaLiearremeerlrrgklk.kplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
                     rWt++e+l+L++arr me+r rr+ +    +W++vs+++r++g+er+p qC+++w nl+++ kki ++ek+ 
  OBART01G42530.1 23 RWTRHETLVLLQARRAMEHRGRRSPQPvRLKWAAVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKNL 94
                     8**********************97764889**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.981681IPR017877Myb-like domain
SuperFamilySSF466894.4E-52083IPR009057Homeodomain-like
PfamPF138373.2E-102391No hitNo description
Gene3DG3DSA:1.10.10.600.0012380IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSGAANATSP AAGAGTPRSR LPRWTRHETL VLLQARRAME HRGRRSPQPV RLKWAAVSAY  60
CRRHGVERGP MQCRKRWGNL SWDLKKIVAW EKNLAAVGRR RRRRGSSRSG TCAASSGARG  120
SCRRRSTGRV YDALVGGHGA APPSDFGEDL ADGDGVDADE LPPPPLMVMP ISATVSAKRG  180
GAASDKNSTS QHDGGGGGGG LKDSEATYGA GVGGEEGTTT ATATATTTSI GRQVIEALER  240
GNRMLGDQLE AQRAAWDAER EQRVALLAAV DKLAGAVCRI ADKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198103RRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032620.0AP003262.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0482D04.
GenBankAP0043320.0AP004332.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629515.11e-142trihelix transcription factor ASR3
TrEMBLA0A0D3EY460.0A0A0D3EY46_9ORYZ; Uncharacterized protein
STRINGOBART01G42530.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-24Trihelix family protein