PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G45260.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 236aa    MW: 24507 Da    PI: 4.9022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G45260.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.4e-154596155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GVr +    rWv+e+r+p     +  +r++lg++ t+e+Aa+a++ a+++++g
  OBART01G45260.1 45 PVYRGVRARAGGSRWVCEVREP-----QaqARIWLGTYPTPEMAARAHDVAALAIKG 96
                     68********9999****9999.....446***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-114596IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2646105IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-1746104IPR016177DNA-binding domain
SMARTSM003801.8E-2446110IPR001471AP2/ERF domain
PROSITE profilePS5103221.15346104IPR001471AP2/ERF domain
CDDcd000187.92E-2247104No hitNo description
PRINTSPR003676.6E-64758IPR001471AP2/ERF domain
PRINTSPR003676.6E-67086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDTEDTSSAS SSSVSPPSSP GGGHHHRLPP KRRAGRKKFR ETRHPVYRGV RARAGGSRWV  60
CEVREPQAQA RIWLGTYPTP EMAARAHDVA ALAIKGRAAH LNFPSLAHTL PRPASTSPSD  120
IQAAAALAAA AAATDQCESS SSAVAAATAT DAEAAESTSS AAASPCAATS SVEENALFDL  180
PDLLLDLSDG LWCSPVWTTA PADQYDAGDD GDDAAAPLLW AEQCWMDAPA APVQPD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376540.0CT837654.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN054J01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626317.12e-67ethylene-responsive transcription factor TINY
SwissprotA2WZI44e-62DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z54e-62DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A0D3EZ571e-165A0A0D3EZ57_9ORYZ; Uncharacterized protein
STRINGOBART01G45260.11e-166(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.17e-39C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]