PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G03780.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 370aa    MW: 42561.4 Da    PI: 9.0254
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G03780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-1681118136
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                      C++Cg +   Tp++Rrgpdg++tLCnaCGl+++ kg++
  OBART02G03780.1  81 CHHCGISAasTPMMRRGPDGPRTLCNACGLMWANKGTM 118
                      *****88888*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.384648IPR010402CCT domain
PfamPF062036.5E-16648IPR010402CCT domain
PROSITE profilePS501149.24975123IPR000679Zinc finger, GATA-type
SMARTSM004012.2E-1275128IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-1279131No hitNo description
Gene3DG3DSA:3.30.50.101.5E-1580121IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.90E-1480124No hitNo description
PROSITE patternPS00344081108IPR000679Zinc finger, GATA-type
PfamPF003201.5E-1481118IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNFPHRMASL MRFREKRKER NFDKKIRYTV RKEVALRMQR NRGQFTSSKS KAEEATSAIT  60
SSEGSPNWGA VEGRPPSAAE CHHCGISAAS TPMMRRGPDG PRTLCNACGL MWANKGTMRE  120
VTKGPPVPLQ IVPAATNDVG YKDALVEAQA LRVNCSSESE RRQALESHVA DLKSDNERLR  180
RLYTETLFKF TNQMKFHTES RNLKEELEKA NTRLLSMEEE YKREIEQLKL GSEMNSNDLE  240
NKLSCALVQQ ATNEAVIKQL NLELEAHKAH IDMLSSRLEQ VTADVHQQYK NEIQDLKDVV  300
IVEQEEKNDM HRKLQNTENE LRIMKMKQAE QQRDSISVQH VETLKQKVMK FRKENESLKR  360
RLATSELDCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0592870.0AK059287.1 Oryza sativa Japonica Group cDNA clone:001-025-D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624854.21e-161protein At-4/1, partial
TrEMBLA0A0D3F0P80.0A0A0D3F0P8_9ORYZ; Uncharacterized protein
STRINGOBART02G03780.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1225322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.14e-49ZIM-like 1