PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G04420.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 168aa    MW: 17118 Da    PI: 4.7885
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G04420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.8e-172368251
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                     +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+ 
  OBART02G04420.1 23 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAAS 68
                     6********.7*********83...36*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.1E-192396IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-162369IPR016177DNA-binding domain
PfamPF008472.7E-112371IPR001471AP2/ERF domain
PROSITE profilePS5103218.4652390IPR001471AP2/ERF domain
CDDcd000181.40E-132355No hitNo description
Gene3DG3DSA:3.30.730.107.1E-222370IPR001471AP2/ERF domain
PRINTSPR003676.5E-82435IPR001471AP2/ERF domain
PRINTSPR003676.5E-84662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MRRARPPPAA AMAGVGVGEG EVRYRGVRRR PSGRYAAEIR DPAKKTPIWL GTFDSAEAAA  60
RAYDAAASTV ESWGVTVAAA AASAGALGLP PPRNGGSNPA ADEDCRSYCG SSSSVLCEDG  120
ASGAGDEAAA PRCSPLPFDL NLPASSPSAA AAAEADEMDW RCDTLLHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-161297379Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875591e-170AK287559.1 Oryza sativa Japonica Group cDNA, clone: J065023L05, full insert sequence.
GenBankAP0048431e-170AP004843.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1103G11.
GenBankAP0048711e-170AP004871.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0419H03.
GenBankAP0149581e-170AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623823.17e-77ethylene-responsive transcription factor 3
TrEMBLA0A0D3F0Y31e-113A0A0D3F0Y3_9ORYZ; Uncharacterized protein
STRINGOBART02G04420.11e-113(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347