PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G04930.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 183aa    MW: 19777.2 Da    PI: 5.4838
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G04930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.75.5e-12228127
                     S---SHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeEL 27
                     k ienk  rqv fskRr+g++KKA+EL
  OBART02G04930.1  2 KLIENKEARQVCFSKRREGVFKKASEL 28
                     569***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.62E-9128IPR002100Transcription factor, MADS-box
SMARTSM004320.0039138IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.049128IPR002100Transcription factor, MADS-box
CDDcd001204.47E-13128No hitNo description
PfamPF003191.2E-11428IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MKLIENKEAR QVCFSKRREG VFKKASELRD ALDEAARVAG VWNDADVRRA GLADLVSMLA  60
ALQRVQAEAS ERVHDIIVEE AMTHYTGAAA AAANLIDYLD AGPFVSHSPG SHDTTTKLIG  120
GNAVHAPPLS FPPMIMPPPL PPQFIHGFGY TDLAAGYGYN LDHGHGAAYE TEEFHNAAAC  180
DFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878655.12e-93agamous-like MADS-box protein AGL28
TrEMBLA0A0D3F1371e-133A0A0D3F137_9ORYZ; Uncharacterized protein
STRINGOBART02G04930.11e-134(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133092432