PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G05020.2
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 136aa    MW: 15028 Da    PI: 9.656
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G05020.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.81.7e-4361361120
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee............vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                      lppGfrFhP+d+elvv+yL  k+++ +       +            ++ +vd++k+ePwdLp+ +  + kewyf+  +d+kya+g+r+nrat+
  OBART02G05020.2   6 LPPGFRFHPRDDELVVDYLSGKLRSGDggaA---SggggagagcptpTLIDVDLNKCEPWDLPEIACIGGKEWYFYNLKDRKYARGQRTNRATE 96 
                      79**********************9996550...34455555666546999************7666789************************ PP

              NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektd 120
                      sgyWkatgkd+e+++ kg+lvg++ktLvfy+grapkge+td
  OBART02G05020.2  97 SGYWKATGKDREITR-KGSLVGMRKTLVFYRGRAPKGERTD 136
                      **************9.999********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-453136IPR003441NAC domain
PROSITE profilePS5100542.7146136IPR003441NAC domain
PfamPF023651.9E-197128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVEARLPPGF RFHPRDDELV VDYLSGKLRS GDGGAASGGG GAGAGCPTPT LIDVDLNKCE  60
PWDLPEIACI GGKEWYFYNL KDRKYARGQR TNRATESGYW KATGKDREIT RKGSLVGMRK  120
TLVFYRGRAP KGERTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-41213611132Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048631e-112AP004863.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0023I17.
GenBankAP0058041e-112AP005804.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0085K21.
GenBankAP0149581e-112AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624259.11e-95NAC domain-containing protein 21/22 isoform X2
RefseqXP_025878697.11e-95NAC domain-containing protein 21/22 isoform X1
SwissprotQ84TE62e-58NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLI1NXK55e-97I1NXK5_ORYGL; Uncharacterized protein
STRINGORGLA02G0046100.18e-98(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.26e-60NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]