PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G06250.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 249aa MW: 26070.2 Da PI: 10.2093

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G06250.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.4	1.3e-07	148	190	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R RKk+++ e ++ v +L eN++L++e+ +l+ +a+l +e+ OBART02G06250.1 148 RPRKKMRLPEVQQLVRSLAVENDSLREEMRTLQRACAALSKEN 190 89*************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	8.1E-4	148	186	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDCAGDDDAV AAGIICSLRG ADLAGWTPPW WCSSSSKGAA REELIWPPVT RGKRSRRRSP 60 SAVAAAAGKK GRWARASPAS PLDYSGGSGS GSGSGSGSAA STSGGEDGAF CSPPGHRPAP 120 ATTKVGAMGR QQQLPFSAPS PLRPAGQRPR KKMRLPEVQQ LVRSLAVEND SLREEMRTLQ 180 RACAALSKEN DKLEIRLQIS SSRNKPMITE DLKGKQQIDQ QSATQSIGGG FALPDLNIPV 240 QDAADGSVH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RPRKKMR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107630	0.0	AK107630.1 Oryza sativa Japonica Group cDNA clone:002-131-E03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015626239.1	1e-177	uncharacterized protein LOC4328519 isoform X1
TrEMBL	A0A0D3F1M1	1e-177	A0A0D3F1M1_9ORYZ; Uncharacterized protein
TrEMBL	I1NXX3	1e-177	I1NXX3_ORYGL; Uncharacterized protein
STRING	ORGLA02G0057900.1	1e-178	(Oryza glaberrima)
STRING	OBART02G06250.1	1e-178	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51