PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G06960.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 169aa    MW: 19221.5 Da    PI: 5.9483
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G06960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.61.1e-1274121552
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                      ++ rr+ +NRe+ArrsR RK+ +++eL   v eL   N++L  el+++
  OBART02G06960.1  74 RKKRRLVSNRESARRSRVRKQRRLDELSSQVSELRDTNQRLLVELNHM 121
                      78899************************************9777764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.5E-1067121No hitNo description
SMARTSM003383.9E-970134IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.13972135IPR004827Basic-leucine zipper domain
PfamPF001702.3E-974120IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-1074125No hitNo description
PROSITE patternPS0003607792IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQHDAISNIA YHPSMDFTSF FLPQTDAYSH DLSALLDMAV VDPYISCNGS SITMIPVTED  60
EANAQPMNHG NDERKKRRLV SNRESARRSR VRKQRRLDEL SSQVSELRDT NQRLLVELNH  120
MISKHARIVR ENSQLREEAS DLQRKLSEME MEDAEVAAAA AAPRTLEVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18692RRSRVRK
28693RRSRVRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankCT8353620.0CT835362.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI022L05, full insert sequence.
GenBankCT8353650.0CT835365.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025K13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624742.11e-105basic leucine zipper 43
TrEMBLA0A0D3F1V51e-120A0A0D3F1V5_9ORYZ; Uncharacterized protein
STRINGOBART02G06960.11e-120(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127422735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-11basic leucine-zipper 42