PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G07840.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 290aa    MW: 30846.3 Da    PI: 9.1635
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G07840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.39.2e-15140200161
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                      +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++
  OBART02G07840.1 140 DKEHKRLKRLLRNRVSAQQARERKKAYLNDLEVKVKDLEKKNSELEERFSTLQNENQMLRQ 200
                      5899****************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.5E-13140204IPR004827Basic-leucine zipper domain
PfamPF001702.2E-13141200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.105142200IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-12144200No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-16144200No hitNo description
CDDcd147044.74E-21145196No hitNo description
PROSITE patternPS000360147162IPR004827Basic-leucine zipper domain
Gene3DG3DSA:2.60.120.2002.1E-6216274IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF498991.89E-8216278IPR013320Concanavalin A-like lectin/glucanase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0010224Biological Processresponse to UV-B
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLHAGSKDER RGQSGEAEAE ASGGVHANPS SPARMQEQAT SSRPSSSERS SSSGGHHMEI  60
KEGKEAPLRS LPLPFPFLIS ILFAPLSGME SDEEIGRVPE LGLEPGGAST SGRAAGGGTE  120
RAQSSTAQAS ARRRGRSPAD KEHKRLKRLL RNRVSAQQAR ERKKAYLNDL EVKVKDLEKK  180
NSELEERFST LQNENQMLRQ AAPAGCGGLR EAEGDEQFVL NGFTAANLSF DGMATLKGHA  240
FFPAPLQFHR TPNSTAMQSF STAFVIGIIS VFEDQGSGSP AAAGGSGRAA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00117ampDAPTransfer from AT5G11260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8337681e-131CT833768.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA034A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623711.12e-90transcription factor HY5
TrEMBLA0A0D3F2560.0A0A0D3F256_9ORYZ; Uncharacterized protein
STRINGOBART02G07840.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.12e-31bZIP family protein