PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G11480.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 331aa    MW: 35556.4 Da    PI: 4.648
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G11480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31171229259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++ tY+geHnh+
  OBART02G11480.1 171 ADVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRSDPNTFILTYTGEHNHS 229
                      69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-32156231IPR003657WRKY domain
PROSITE profilePS5081133.832165231IPR003657WRKY domain
SuperFamilySSF1182901.57E-26168231IPR003657WRKY domain
SMARTSM007742.1E-37170230IPR003657WRKY domain
PfamPF031063.9E-26172228IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEELCGNNW DLDAVVRLGC CRQRISPAAV AQQVDPFASF LQQGVAMEVA AEKEVGVEAA  60
WSFPELTVRD GGGGGLGRDA DELLKAFCAA FPSSSSSKSS PLPTPPPPPP TQPQPEQQKP  120
VTVQENLPAP ARASQPAAAR QVPAGGVPRS KRRKNQQKKV VRHVPADGVS ADVWAWRKYG  180
QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRSDPNTFIL TYTGEHNHSA PTHRNSLAGT  240
TRNKLPSSSS ASAASAQPQP PPPSMEEDEE EEEEEELLVE DMEMAGEDEL LFLNGGDDNA  300
ALDGTPMSSL FDIADEPFLP SPWTEPTAAG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-19154232280Disease resistance protein RRS1
5w3x_D2e-19154232280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667750.0AK066775.1 Oryza sativa Japonica Group cDNA clone:J013074N21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623400.11e-175probable WRKY transcription factor 27
TrEMBLA0A0D3F3C60.0A0A0D3F3C6_9ORYZ; Uncharacterized protein
STRINGOBART02G11480.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-44WRKY family protein