PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G11770.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 552aa    MW: 60551.7 Da    PI: 6.2694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G11770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.5e-1183120745
                      HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       Ede l++ ++ +G ++W+t+ar ++ gR + qc+ rw 
  OBART02G11770.1  83 HEDESLIQMINIYGHNNWETVARAIP-GRNAQQCRVRWK 120
                      69************************.***********6 PP
2Myb_DNA-binding32.81.7e-10129171145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++W+ eE+++l+++ + +G++ W + a+++  gRt   +k++w+
  OBART02G11770.1 129 KQAWSREEELRLIHVQQIFGNK-WCRMAEHFT-GRTSAAIKEHWR 171
                      799*******************.********9.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-1683131IPR009057Homeodomain-like
SMARTSM007171.7E-583125IPR001005SANT/Myb domain
SuperFamilySSF466896.97E-2183170IPR009057Homeodomain-like
PROSITE profilePS500908.94384123IPR017877Myb-like domain
PfamPF139216.7E-1284140No hitNo description
CDDcd001672.58E-1084123No hitNo description
PROSITE profilePS5129418.223124178IPR017930Myb domain
SMARTSM007174.1E-9128176IPR001005SANT/Myb domain
CDDcd001672.34E-8131171No hitNo description
Gene3DG3DSA:1.10.10.605.6E-15132179IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS  60
EKRRRRWSTK ESCLDFYFII LLHEDESLIQ MINIYGHNNW ETVARAIPGR NAQQCRVRWK  120
FNLDPAISKQ AWSREEELRL IHVQQIFGNK WCRMAEHFTG RTSAAIKEHW RGPMKRKLNS  180
YLASGLLKKS PGLPENLSVS QSSDSNILQQ CDVSSDENKL LSDLRPSLKS KEGMSSKCDG  240
SSSDNQLLSD LRASLKSKGA SSKCDGSSGD NQLLSDLRAS LKSKGASSKC DGSSGDNQLL  300
SDLRASLKSK GASSKCDGSS DENKLLSDLR ACLKSKQGAS SKCDGSSGEN QLLSDLQASL  360
MSKQRTSSKY KQGASSKSKQ GTSSKSKQGF IDLCENTDTS EGESSELICT ERPDPDSGEA  420
SQRIRDRLNW RKRARKKLVF LSSPVELKVS AVAESERHLQ ESKEMSPEVN IVSPPAVLQG  480
FSPEVPSVCE KIVEPPLADF NQAKNVCSLE TSSDPCTLEQ HLANVSDLLD MSYIDGLMII  540
PPAGCPYDGD FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-208418014110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209130.0AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622738.10.0transcription factor MYB64
TrEMBLA0A0D3F3F70.0A0A0D3F3F7_9ORYZ; Uncharacterized protein
STRINGOBART02G11770.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP165241011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.16e-33myb domain protein 3r-4