PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G11770.2

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 501aa MW: 54574.9 Da PI: 6.2121

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G11770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.9	1.5e-10	78	120	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W+ eE+++l+++ + +G++ W + a+++ gRt +k++w+ OBART02G11770.2 78 KQAWSREEELRLIHVQQIFGNK-WCRMAEHFT-GRTSAAIKEHWR 120 799*****************.****9.*********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.9E-13	65	128	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-15	71	128	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.223	73	127	IPR017930	Myb domain
SMART	SM00717	4.1E-9	77	125	IPR001005	SANT/Myb domain
Pfam	PF00249	6.2E-9	78	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.58E-8	80	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS 60 EKRRRRWWKF NLDPAISKQA WSREEELRLI HVQQIFGNKW CRMAEHFTGR TSAAIKEHWR 120 GPMKRKLNSY LASGLLKKSP GLPENLSVSQ SSDSNILQQC DVSSDENKLL SDLRPSLKSK 180 EGMSSKCDGS SSDNQLLSDL RASLKSKGAS SKCDGSSGDN QLLSDLRASL KSKGASSKCD 240 GSSGDNQLLS DLRASLKSKG ASSKCDGSSD ENKLLSDLRA CLKSKQGASS KCDGSSGENQ 300 LLSDLQASLM SKQRTSSKYK QGASSKSKQG TSSKSKQGFI DLCENTDTSE GESSELICTE 360 RPDPDSGEAS QRIRDRLNWR KRARKKLVFL SSPVELKVSA VAESERHLQE SKEMSPEVNI 420 VSPPAVLQGF SPEVPSVCEK IVEPPLADFN QAKNVCSLET SSDPCTLEQH LANVSDLLDM 480 SYIDGLMIIP PAGCPYDGDF I

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MASRAVEGEG EGEEEGEGKG NLANAPEDSH KHCQGEELEA GQSCKINYQD IMDKCGIEIS  60
EKRRRRWWKF NLDPAISKQA WSREEELRLI HVQQIFGNKW CRMAEHFTGR TSAAIKEHWR  120
GPMKRKLNSY LASGLLKKSP GLPENLSVSQ SSDSNILQQC DVSSDENKLL SDLRPSLKSK  180
EGMSSKCDGS SSDNQLLSDL RASLKSKGAS SKCDGSSGDN QLLSDLRASL KSKGASSKCD  240
GSSGDNQLLS DLRASLKSKG ASSKCDGSSD ENKLLSDLRA CLKSKQGASS KCDGSSGENQ  300
LLSDLQASLM SKQRTSSKYK QGASSKSKQG TSSKSKQGFI DLCENTDTSE GESSELICTE  360
RPDPDSGEAS QRIRDRLNWR KRARKKLVFL SSPVELKVSA VAESERHLQE SKEMSPEVNI  420
VSPPAVLQGF SPEVPSVCEK IVEPPLADFN QAKNVCSLET SSDPCTLEQH LANVSDLLDM  480
SYIDGLMIIP PAGCPYDGDF I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK120913	0.0	AK120913.1 Oryza sativa Japonica Group cDNA clone:J023034G08, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622738.1	0.0	transcription factor MYB64
TrEMBL	A0A0D3F3F8	0.0	A0A0D3F3F8_9ORYZ; Uncharacterized protein
STRING	OBART02G11770.1	0.0	(Oryza barthii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.1	5e-20	myb domain protein 3r-4