PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G11990.4
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 421aa    MW: 46874.2 Da    PI: 8.0581
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G11990.4genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR50.83.3e-16121160140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+C+ks+ClkkYCeCf+a+  Cs++C+C+dCkN e
  OBART02G11990.4 121 KHNKGCHCRKSECLKKYCECFQANILCSKNCRCQDCKNFE 160
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163426.3640161IPR005172CRC domain
SMARTSM011147.6E-18121162IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.1E-12124159IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MPPVRSAPVA PPPPPPPPQQ KKPAVPVSRP WPMSFTPHPP PPPPPPLPSN YYQYVFSARV  60
YCDGCHCSPC GNKIENENIR KEAIETILLR NPLAFQPKIE NSPNTVTVRK DNSEAIPPIP  120
KHNKGCHCRK SECLKKYCEC FQANILCSKN CRCQDCKNFE GSEERKALVQ MKNASDRNHI  180
QEAANFALNG ATGSLGYKSS PVRRKKYQEN SLGEQILSEA QFQPLASSCT GFGGDIASNY  240
QSKSSEMIYR SPLANTIPLI EVNDLVKNAL VACRKAPEAF LTKAGNKVEM QAEKQYQTND  300
EINNDKTKEQ NLKEASLKDI QNKACIDRQN INGTEPHLAN SFKDSRPASP GTQALMCDEM  360
DTTFGNEDYR SPFVVPSRDQ DISELNADQE RIVLTGLRDY LRVLITRGNI NGECNLLTLL  420
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-197417147133Protein lin-54 homolog
5fd3_B1e-197417147133Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047710.0AP004771.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0413A11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0D3F3I50.0A0A0D3F3I5_9ORYZ; Uncharacterized protein
STRINGOBART02G11990.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-67Tesmin/TSO1-like CXC domain-containing protein