PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G12640.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GeBP
Protein Properties Length: 207aa    MW: 23593.2 Da    PI: 10.1174
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G12640.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57338.33.6e-122881098
           DUF573 10 eDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98
                     +De+ +L  l+   +++g++   ++++++  v +s++ k  k s++ eK+rrLK++++   kk+++g +   +ke+d  +++ls+ iWg+
  OBART02G12640.1  2 DDEVKILEVLVAHFKSHGTQ--LNVEGIIAAVGDSLERKSIKySDMYEKVRRLKQRYEVTTKKVEHGGDLP-AKEDDLRMYQLSSEIWGK 88
                     7**********999999954..699***********98865538***********************9965.567889**********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-17287IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MDDEVKILEV LVAHFKSHGT QLNVEGIIAA VGDSLERKSI KYSDMYEKVR RLKQRYEVTT  60
KKVEHGGDLP AKEDDLRMYQ LSSEIWGKNA KEYVSAPASQ NKGNSSKITR RGRLRKIRWM  120
NATVPSIRRE HVELQSLYPN LASFVKGIEL QHACGSTFKR AFEFISDDKA CTLESKIKKQ  180
KIAEVRMQLR LADTKKEVAN ALLGLLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RRGRLRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028861e-122AK102886.1 Oryza sativa Japonica Group cDNA clone:J033112K05, full insert sequence.
GenBankAP0041681e-122AP004168.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1756_H07.
GenBankAP0149581e-122AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-122CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571636.12e-57hepatoma-derived growth factor-related protein 2
TrEMBLA0A0D3F3R81e-151A0A0D3F3R8_9ORYZ; Uncharacterized protein
STRINGOBART02G12640.11e-152(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72892737