PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G17360.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 408aa MW: 44903.7 Da PI: 4.5984

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G17360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	75.1	1.3e-23	17	87	2	71
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBT CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekk 71 Fl k+ye+++d++++ ++sws ++ sfvv+++ efa ++Lp yFkhsnf+SF+RQLn+Y + d k+ OBART02G17360.1 17 FLLKTYEMVDDPSTDAVVSWSdASDASFVVWNHPEFAARLLPAYFKHSNFSSFIRQLNTYKSNLQADLWKS 87 9******************66679********************************86655544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	3.4E-24	12	79	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.85E-20	13	78	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	7.0E-27	13	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.3E-19	17	80	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-14	17	40	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-14	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.3E-14	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence Send to blast
MEVAAGAGGG GGGPAPFLLK TYEMVDDPST DAVVSWSDAS DASFVVWNHP EFAARLLPAY 60 FKHSNFSSFI RQLNTYKSNL QADLWKSKQQ QSGTMNQIED LERRVLGMEQ RQTKMIAFLQ 120 QASKNPQFVN KLVKMAEASS IFTDAFNKKR RLPGLDYSIE NTETTSFYDD HSSTSKQETG 180 NLLNQHFSDK LRLGLCPAMT ESNIITLSTQ SSNEDNGSPH GKHPECDMMG RECLPLVPQM 240 MELSDTGTSI CPSKSSCFAP PISDEGLLTC HLSLTLASCS MDVDKSQGLN ANGTTIDNPT 300 EAATATMEKD DTIDRSFDDN QKKSADSRTA DATTPRADAR VASEAPAAPA AVVNDKFWEQ 360 FLTERPGCSE TEEASSGLRT DTSREQMDNR QAYDHSRNDR EDVEQLKL

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence Send to blast

MEVAAGAGGG GGGPAPFLLK TYEMVDDPST DAVVSWSDAS DASFVVWNHP EFAARLLPAY  60
FKHSNFSSFI RQLNTYKSNL QADLWKSKQQ QSGTMNQIED LERRVLGMEQ RQTKMIAFLQ  120
QASKNPQFVN KLVKMAEASS IFTDAFNKKR RLPGLDYSIE NTETTSFYDD HSSTSKQETG  180
NLLNQHFSDK LRLGLCPAMT ESNIITLSTQ SSNEDNGSPH GKHPECDMMG RECLPLVPQM  240
MELSDTGTSI CPSKSSCFAP PISDEGLLTC HLSLTLASCS MDVDKSQGLN ANGTTIDNPT  300
EAATATMEKD DTIDRSFDDN QKKSADSRTA DATTPRADAR VASEAPAAPA AVVNDKFWEQ  360
FLTERPGCSE TEEASSGLRT DTSREQMDNR QAYDHSRNDR EDVEQLKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-14	1	76	12	87	Heat shock factor protein 1
5d5v_B	1e-14	1	76	12	87	Heat shock factor protein 1
5d5v_D	1e-14	1	76	12	87	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065643	0.0	AK065643.1 Oryza sativa Japonica Group cDNA clone:J013035J03, full insert sequence.
GenBank	AP004999	0.0	AP004999.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0040H05.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622576.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	0.0	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A0D3F5D7	0.0	A0A0D3F5D7_9ORYZ; Uncharacterized protein
STRING	OBART02G17360.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	4e-52	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]