PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G19940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 201aa    MW: 21210.7 Da    PI: 6.9772
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G19940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-0891120234
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskap 34 
                       r+h  +Er RR++i++ f  Lr+l+P++   +
  OBART02G19940.1  91 ERMHIFAERERRRKIKNMFTDLRDLVPSL---T 120
                      578999**********************8...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-987122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-788122No hitNo description
PROSITE profilePS5088810.09989146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-789121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-692120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.89E-6121173No hitNo description
PROSITE profilePS516718.573124201IPR002912ACT domain
CDDcd048733.23E-4125186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAQEGTSSNA PPAAASMGSG DGDNKEGTGE SGNNQLLLPA IAASADKGKG VVAGTGNVDA  60
KGKTTATPPA ASSTNAPNNQ GGGGGGGRSR ERMHIFAERE RRRKIKNMFT DLRDLVPSLT  120
NKAFINVSVA RRPGVLTMIV DVLERHSIDV VTAQIASDQS RSLFTIHTSV DRERGMFMDT  180
ATAEEIYQLA VSEIMVWLHS E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056110.0AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025878857.17e-71transcription factor bHLH95
TrEMBLA0A0D3F6751e-145A0A0D3F675_9ORYZ; Uncharacterized protein
STRINGOBART02G19940.11e-145(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691