PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G19960.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 219aa MW: 23791.8 Da PI: 6.7808

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G19960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.7e-08	93	118	7	35
HHHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 7 erErrRRdriNsafeeLrellPkaskaps 35 rEr RR+r+N+ f+ +r+l+P++ p OBART02G19960.1 93 VRERERRRRMNDMFAGIRRLVPNL---PE 118 59*********************7...43 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-7	84	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-5	92	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-5	94	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MSQEEQRHGR QLPLATSGVI TFNGVPLSPL TAGAESDGDD DDVVIVDACN NGKRKVGNGE 60 EGRGSQGGDD DDDVVAVHGG VGGGGNRACM FAVRERERRR RMNDMFAGIR RLVPNLPEKT 120 WSWGDNVVVS VLGNIGNMTV RAPLRRTGVL AMASAALKRY NITAVTSLSG TDASRTQNMF 180 MFYTIIDMPD RQPQFVHPKV FEAMYRAAAA EIAAWINCY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005611	0.0	AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624470.2	2e-59	uncharacterized protein LOC107276567 isoform X1
Refseq	XP_025878834.1	2e-59	uncharacterized protein LOC107276567 isoform X2
TrEMBL	A0A0D3F677	1e-161	A0A0D3F677_9ORYZ; Uncharacterized protein
STRING	OBART02G19960.1	1e-161	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18142	7	7