PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G20790.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 150aa    MW: 16408.3 Da    PI: 7.4626
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G20790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213557123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C +C+k+F ++  L  H++ H
  OBART02G20790.1 35 FSCCYCPKRFQSSQALGGHQNAH 57
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.18E-53461No hitNo description
PROSITE profilePS5015710.2013562IPR007087Zinc finger, C2H2
PROSITE patternPS0002803757IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPGAPEFMGE QMDNEELNLS LSLQPSYPSR FQTEFSCCYC PKRFQSSQAL GGHQNAHKLQ  60
RNLAKRNREA FLSISQRKGA NAGIKDGSSA LSAESICKIS SGKKHHKEAW QVMQGSCGSS  120
SSGTVMHKSI EQDVEDEDPS NGTIDLSLKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058830.0AP005883.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0435E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3F6H01e-107A0A0D3F6H0_9ORYZ; Uncharacterized protein
STRINGOBART02G20790.11e-108(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-15zinc finger protein 2