PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G20940.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 396aa    MW: 41478.6 Da    PI: 6.0074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G20940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12205250555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  OBART02G20940.1 205 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 250
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-17198261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-13198254No hitNo description
PROSITE profilePS5088817.06200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-17202260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9205250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDDGGAAML GALEPCAMPL TDSGGPPVIC SSSSNDSSGS EHSAAMPAGG GFLVGEQQQH  60
VPPAAYAAGG VLPSMAAGEE TPQSFGFGSL FNGDLLQEAN VSKYHHQQQQ QLGVVPSSQP  120
HHLNEFSSGL HHLNLSSLIS GPLASFNATQ SHRQPAEACG GKNGCAAPFV NLSEVLPKGN  180
GSGSAGNGAP KPRVRARRGQ ATDPHSIAER LRREKISDRM KDLQELVPNS NKTNKASMLD  240
EIIDYVKFLQ LQVKVLSMSR LGAAEAVVPL LTETQTESPG LLLSPRSSSG ERQAGAVTGG  300
LPGDQPELLD GGAMFEQEVV KLMEDNMTAA MQYLQSKGLC LMPVALASAI SAQKGTSSAA  360
VRPEKKNGGD EEDVKGEFDA PRRPPVGRPK EMRSRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0D3F6J30.0A0A0D3F6J3_9ORYZ; Uncharacterized protein
STRINGOBART02G20940.20.0(Oryza barthii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.19e-55LJRHL1-like 3