PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G23690.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 246aa    MW: 25950.4 Da    PI: 8.0117
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G23690.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.61.2e-083168438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                     r C+ ++ + ++l+C+ ++ +lC+ C    H g    H 
  OBART02G23690.1 31 RACDSCGAEAARLYCRADGAFLCARCDARAH-GagsrHA 68
                     57**************************999.4466675 PP
2zf-B_box231.7e-0770114341
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                       + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  OBART02G23690.1  70 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 114
                      679*****************************6578888888765 PP
3CCT712.8e-24175218144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea+l+RY+eKrk+R+F+K+irY+sRKa+Ae+RpR+KGrF+k++
  OBART02G23690.1 175 REARLMRYREKRKNRRFDKTIRYASRKAYAETRPRIKGRFAKRT 218
                      9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.4E-92872IPR000315B-box-type zinc finger
PROSITE profilePS5011910.9932872IPR000315B-box-type zinc finger
CDDcd000213.93E-93172No hitNo description
PfamPF006431.2E-63267IPR000315B-box-type zinc finger
PROSITE profilePS5011910.18268115IPR000315B-box-type zinc finger
PfamPF006437.4E-670114IPR000315B-box-type zinc finger
SMARTSM003361.3E-873115IPR000315B-box-type zinc finger
PfamPF062031.7E-18175217IPR010402CCT domain
PROSITE profilePS5101716.916175217IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010099Biological Processregulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEAAEDKAMV VGVGGAVAAG YSSSSWGLGT RACDSCGAEA ARLYCRADGA FLCARCDARA  60
HGAGSRHARV WLCEVCEHAP AAVTCRADAA ALCAACDADI HSANPLARRH ERLPAIGVPV  120
APPELDLTAG SLFYPEHCMA HSLSSSEVAI VPDALSAGAA APPMVVVVAS KGKEREARLM  180
RYREKRKNRR FDKTIRYASR KAYAETRPRI KGRFAKRTAD ADDDDEAPCS PAFSALAASD  240
GVVPSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0585360.0AK058536.1 Oryza sativa Japonica Group cDNA clone:001-017-B01, full insert sequence.
GenBankAK1000970.0AK100097.1 Oryza sativa Japonica Group cDNA clone:J023004D12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688663.12e-89PREDICTED: zinc finger protein CONSTANS-LIKE 4-like
SwissprotQ9SK534e-60COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A0D3F7H21e-174A0A0D3F7H2_9ORYZ; Uncharacterized protein
STRINGOBART02G23690.11e-174(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.12e-24CONSTANS-like 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]