PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G24080.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 91aa    MW: 9450.94 Da    PI: 9.6149
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G24080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY40.11.3e-123422362
            YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaesh 62
                      vsvPs+slfk+vtvrCGhC+sll vn+      ++a   
  OBART02G24080.1  3 CVSVPSSSLFKTVTVRCGHCSSLLPVNIGGLLLPTSAAAT 42
                     69**************************988877666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-11340IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MACVSVPSSS LFKTVTVRCG HCSSLLPVNI GGLLLPTSAA ATVATAPPPP PPPPPPAAAH  60
FPCVHKKLRS KREETREEGR GGKKRDDDVA S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0668363e-80AK066836.1 Oryza sativa Japonica Group cDNA clone:J013088I01, full insert sequence.
GenBankAP0054203e-80AP005420.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0418B08.
GenBankAP0055683e-80AP005568.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OJ1299_A11.
GenBankAP0149653e-80AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126173e-80CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D3F7L92e-57A0A0D3F7L9_9ORYZ; Uncharacterized protein
STRINGOBART02G24080.13e-58(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5164022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.29e-09YABBY family protein