PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G24560.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 247aa    MW: 27445.6 Da    PI: 7.6527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G24560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.5e-51101431128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrF P+deelv++yL+kkv+++++   +++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev  
  OBART02G24560.1  10 LPPGFRFFPSDEELVCHYLHKKVANERIAQGSTLVEVDLHAREPWELPEVAKLTASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRG 103
                      79*************************999889***************87778889************************************99 PP

              NAM  95 k......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +      ++++vg++ktLvfy+grap+g+kt Wvmhe+rl
  OBART02G24560.1 104 SssssssSRAVVGMRKTLVFYQGRAPNGVKTGWVMHEFRL 143
                      86666655566***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-597162IPR003441NAC domain
PROSITE profilePS5100557.87410162IPR003441NAC domain
PfamPF023656.4E-2811143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALREIESTL PPGFRFFPSD EELVCHYLHK KVANERIAQG STLVEVDLHA REPWELPEVA  60
KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE VRGSSSSSSS SRAVVGMRKT  120
LVFYQGRAPN GVKTGWVMHE FRLDSPHSQP KEDWVLCRVF QKRGGYYVGS QQLAAGYDSA  180
AGFANPTQPA VPHYQYGGAV IGFPEEFGSG GGVADEYGFG TYLDLGFELD DTASVLGGIR  240
SFPQGWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-48516610172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0068471e-148AP006847.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, fosmid clone:OSJNOa148N02.
GenBankAP0149581e-148AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006648848.11e-122PREDICTED: NAC domain-containing protein 21/22-like
SwissprotQ84TE61e-61NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A0D3F7S20.0A0A0D3F7S2_9ORYZ; Uncharacterized protein
STRINGOBART02G24560.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-75NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]