PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G26000.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 208aa    MW: 23215.7 Da    PI: 4.6071
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G26000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.3e-1427651956
                     HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox 19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  OBART02G26000.1 27 FHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 65
                     5554789999****************************9 PP
2HD-ZIP_I/II102.43.8e-33251031693
      HD-ZIP_I/II  16 esFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++++e
  OBART02G26000.1  25 TTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDE 103
                      57888777******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.1E-62071IPR001356Homeobox domain
PfamPF000462.2E-112765IPR001356Homeobox domain
PROSITE profilePS5007113.2642767IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-143074IPR009057Homeodomain-like
SuperFamilySSF466892.1E-123277IPR009057Homeodomain-like
CDDcd000869.22E-123668No hitNo description
PRINTSPR000314.6E-73847IPR000047Helix-turn-helix motif
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
PRINTSPR000314.6E-74763IPR000047Helix-turn-helix motif
PfamPF021832.6E-1667108IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MESDCQFLVA PPQPHMYYDT AAAATTFHAR RAKLEPREKA ELARELGLQP RQVAIWFQNK  60
RARWRSKQIE HDYAALRAQY DALHARVESL RQEKLALAAQ VDELRGKLNE RQDQSGSCDG  120
GGAEGDDDDK RNRVMNASSS GLVEEDYVSC LAVPVVDVSE DGSAACGGSS YEYDHHLDYL  180
GGGQLPDPFC GMPDLWETWP MVEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636850.0AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankEU8475150.0EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624138.11e-141homeobox-leucine zipper protein HOX24
SwissprotA2X7U11e-143HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A0D3F8851e-153A0A0D3F885_9ORYZ; Uncharacterized protein
STRINGOBART02G26000.11e-154(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-27homeobox 7