PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G28110.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 151aa    MW: 15837.3 Da    PI: 5.0657
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G28110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.71.3e-1095145147
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWe 47 
                      f+kv tpsdv+k++rlv+pk++ae++       +e++  l +ed+ g+ W+
  OBART02G28110.1  95 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldAAANEKGLLLNFEDRAGKPWR 145
                      89***************************9555568889***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-1989145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-1192145IPR015300DNA-binding pseudobarrel domain
CDDcd100171.61E-893145No hitNo description
PfamPF023623.5E-895145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MEFTTSSRFS KEEEDEEQDE AGRREIPFMT ATAEAAPAPT SSSSSPAHHA ASASASASAS  60
GSSTPFRSDD GAGASGSGGG GGGGEAEVVE KEHMFDKVVT PSDVGKLNRL VIPKQYAEKY  120
FPLDAAANEK GLLLNFEDRA GKPWRGGRRK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-2990145358B3 domain-containing transcription factor NGA1
5os9_B2e-2990145358B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015689086.13e-48PREDICTED: B3 domain-containing protein Os02g0683500
RefseqXP_015689087.13e-48PREDICTED: B3 domain-containing protein Os02g0683500
SwissprotQ6EU301e-47Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A0D3F8Z11e-103A0A0D3F8Z1_9ORYZ; Uncharacterized protein
STRINGOBART02G28110.11e-104(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-30B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]