PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G29000.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 441aa MW: 45066.2 Da PI: 7.9733

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G29000.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	7.1e-31	171	229	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OBART02G29000.1 171 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 229 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	33.109	165	231	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	5.1E-31	165	231	IPR003657	WRKY domain
SuperFamily	SSF118290	2.75E-26	168	231	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	170	230	IPR003657	WRKY domain
Pfam	PF03106	9.3E-26	172	229	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSGADAFGDP FAGLPDPFGG DYPSSSGGAA AAADFFDAVV AKAGFVDVGV LGGGGGGGCD 60 GGGVDGGGGG SSLLGMSKPI LPRAAMQLPS VSPRAIRPYP VMAGDTVKLG APMAGGPCAF 120 DGAAAAGLHM SSSPRGAVGG IKRRKNQARK VVCIPAPAAA GGRTSGEVVP SDLWAWRKYG 180 QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS 240 TRSHHAKNSS SNSSSSGASS ASKNNSSHSG YHHHHHQKPL VKAEPNDQSA AAAAATTAAT 300 VPVKEEAAMV GTSSEALAKT TQKSMEDAAA AASATAAAVE HSDLMQQMFS QSYRPMIPEA 360 AAGGHHDDFF ADLAELESDP MSLIFSKEYM ATNYKPAGDP AGKEMNAVDK GLDPAYMLDW 420 SSTTVVTRAG GSSFMQGEGG L

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSGADAFGDP FAGLPDPFGG DYPSSSGGAA AAADFFDAVV AKAGFVDVGV LGGGGGGGCD  60
GGGVDGGGGG SSLLGMSKPI LPRAAMQLPS VSPRAIRPYP VMAGDTVKLG APMAGGPCAF  120
DGAAAAGLHM SSSPRGAVGG IKRRKNQARK VVCIPAPAAA GGRTSGEVVP SDLWAWRKYG  180
QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW PTQRNALAGS  240
TRSHHAKNSS SNSSSSGASS ASKNNSSHSG YHHHHHQKPL VKAEPNDQSA AAAAATTAAT  300
VPVKEEAAMV GTSSEALAKT TQKSMEDAAA AASATAAAVE HSDLMQQMFS QSYRPMIPEA  360
AAGGHHDDFF ADLAELESDP MSLIFSKEYM ATNYKPAGDP AGKEMNAVDK GLDPAYMLDW  420
SSTTVVTRAG GSSFMQGEGG L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	145	232	2	80	Disease resistance protein RRS1
5w3x_D	4e-25	145	232	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073100	0.0	AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624748.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	2e-70	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0D3F9A6	0.0	A0A0D3F9A6_9ORYZ; Uncharacterized protein
STRING	OBART02G29000.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-67	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]