PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G29520.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 183aa    MW: 20426.8 Da    PI: 8.4647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G29520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-0787134347
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      +WTt   + + +a + +  +   +W  +ar +g g++  ++k ++ k+
  OBART02G29520.1  87 SWTTKQNKVFERALAIYDRDtpdRWQNVARAVGGGKSVDDVKRHYEKL 134
                      7*****************99*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.52983139IPR017884SANT domain
SMARTSM007175.8E-684137IPR001005SANT/Myb domain
SuperFamilySSF466896.98E-1186142IPR009057Homeodomain-like
CDDcd001675.54E-487135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGEGMEVGIS YDLAAENEIT GPMIRPYVPT CCLHKIGPIV PCKKKETSEP RDQLDLILVT  60
FVFADATDVK EPNKPILLPP ARRMSSSWTT KQNKVFERAL AIYDRDTPDR WQNVARAVGG  120
GKSVDDVKRH YEKLIKDVDR IDSTGGHQGS HYNSSNASSS SSSSSNSRGS ANEDQRRRYH  180
NFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-18881431165RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1213861e-166AK121386.1 Oryza sativa Japonica Group cDNA clone:J023127K17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627086.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_015627089.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_025878627.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_025878628.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_025878629.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_025878630.14e-50protein RADIALIS-like 3 isoform X2
RefseqXP_025878631.14e-50protein RADIALIS-like 3 isoform X2
TrEMBLA0A0D3F9G81e-135A0A0D3F9G8_9ORYZ; Uncharacterized protein
STRINGOBART02G29520.11e-136(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-22RAD-like 6