PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G29800.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 294aa    MW: 30526.3 Da    PI: 6.7789
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G29800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-09208249955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  OBART02G29800.1 208 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 249
                      69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-11200257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.88E-12201253No hitNo description
SuperFamilySSF474592.09E-13201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-11205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6208249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MALVRERAMV YGGGFDAEAF GGGFESSQMG YGHDALLDID AAALFGGYEA AASAGCALVQ  60
DGAAGWAGAG ASSSVLAFDR AAQAEEAECD AWIEAMDQSY GTGGEAAPYR STTAVAFDAA  120
TGCFSLTERA TGGGGGAVRA AVPEHVGRRR LPERAAPAPA PRGSQKRAHA ESSQAMSPSK  180
KQCGAGRKAG KAKSAPTTPT KDPQSLAAKN RRERISERLR ILQELVPNGT KVDLVTMLEK  240
AISYVKFLQL QVKVLATDEF WPAQGGKAPE ISQVKEALDA ILSSSSPLMG QLMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096620.0AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624282.11e-171putative transcription factor bHLH086
TrEMBLA0A0D3F9K50.0A0A0D3F9K5_9ORYZ; Uncharacterized protein
STRINGOBART02G29800.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-40ROOT HAIR DEFECTIVE6