PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G31160.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25187.6 Da    PI: 5.0737
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G31160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.5e-2183136356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  OBART02G31160.1  83 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 136
                      5678*************************************************9 PP
2HD-ZIP_I/II130.56.6e-4282171190
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++L+++
  OBART02G31160.1  82 EKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQ 171
                      69*************************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-1977140IPR009057Homeodomain-like
PROSITE profilePS5007118.2278138IPR001356Homeobox domain
SMARTSM003892.0E-2081142IPR001356Homeobox domain
CDDcd000863.64E-1883139No hitNo description
PfamPF000464.0E-1883136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-2284145IPR009057Homeodomain-like
PRINTSPR000311.1E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000311.1E-6118134IPR000047Helix-turn-helix motif
PfamPF021836.4E-14138171IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MESGRLIFST AGSGAGQMLF LDCGAGGAGG GGGGGVGGGA MFHRGARPVL GMEEGGRGVK  60
RPFFTTPDEL LEEEYYDEQL PEKKRRLTPE QVHLLERSFE EENKLEPERK TELARKLGLQ  120
PRQVAVWFQN RRARWKTKQL ERDFDRLKAS FDALRADHDA LLQDNHRLHS QSEEDDGAGS  180
DEGCSYYADD AGVLFADHGH HHHHQHADDD EEDGQQISCW WMWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1195920.0AK119592.1 Oryza sativa Japonica Group cDNA clone:002-117-D05, full insert sequence.
GenBankAY5590450.0AY559045.1 Oryza sativa homeodomain leucine zipper protein 16 (hox16) mRNA, complete cds.
GenBankCU4059600.0CU405960.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626253.13e-92homeobox-leucine zipper protein HOX16 isoform X1
SwissprotQ6YWR42e-93HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A0D3FA171e-163A0A0D3FA17_9ORYZ; Uncharacterized protein
STRINGOBART02G31160.11e-164(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.17e-54homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]