PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G32320.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Nin-like
Protein Properties Length: 232aa    MW: 27397 Da    PI: 5.638
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G32320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.41.1e-26113163252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek++++e +s+yF lpik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl
  OBART02G32320.1 113 EKTLTFELVSQYFCLPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 163
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.40595184IPR003035RWP-RK domain
PfamPF020423.8E-22115163IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEKWRFYGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT  60
LFDGDILSIW GDMKEDAYHK SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGEKTLTFEL  120
VSQYFCLPIK QAAQELNVGL TLLKRRCRVL GIPRWPHRKV KSLETLIKNV QELGMETGQD  180
EDNTRNAVEM LQQTKKLIEQ SPDAKLDDWM KMLRQACFKE NYKRRRLLAI EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222226KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627113.11e-172protein RKD1
RefseqXP_015627115.11e-172protein RKD1
SwissprotQ9M9U97e-40RKD1_ARATH; Protein RKD1
TrEMBLA0A0D3FAF11e-172A0A0D3FAF1_9ORYZ; Uncharacterized protein
STRINGOBART02G32320.11e-173(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.12e-42RWP-RK domain-containing protein