PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OBART02G32430.1

Organism

Oryza barthii

Taxonomic ID

65489

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 168aa MW: 16029.4 Da PI: 10.5496

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OBART02G32430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	42.6	2.2e-13	64	94	1	31
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaar 31 aa+k+++++++hTkv+gR+RR+R++a+caar OBART02G32430.1 64 AAPKRSSTKDRHTKVEGRGRRIRMPALCAAR 94 689**************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.4E-9	70	94	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDVAGDAGGG RRPNFPLQLL EKKEEQPCSS SAAGGGTGPS SAGGNGNNGS GPGGAGGEMQ 60 VRKAAPKRSS TKDRHTKVEG RGRRIRMPAL CAARQLGLGP VGGGGGGGGG GEGHMGILAA 120 LNAYRTQAAT DAAGQQGGGG GGGGSSQQQH GGGGGGGERH QSISTSDS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005733	1e-151	AP005733.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03.
GenBank	AP005848	1e-151	AP005848.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11.
GenBank	AP014958	1e-151	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624016.1	5e-45	transcription factor TCP14
TrEMBL	A0A0D3FAG5	1e-109	A0A0D3FAG5_9ORYZ; Uncharacterized protein
STRING	OBART02G32430.1	1e-110	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3744	34	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-15	TCP family protein