PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G34040.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 601aa    MW: 63416.8 Da    PI: 4.6567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G34040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.5e-30366425159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  OBART02G34040.1 366 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 425
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31351427IPR003657WRKY domain
SuperFamilySSF1182903.14E-27359427IPR003657WRKY domain
PROSITE profilePS5081128.529361427IPR003657WRKY domain
SMARTSM007741.4E-37366426IPR003657WRKY domain
PfamPF031061.1E-26367425IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MTWDNRIKEE SSLLIALLIR LRHPDIDLDA SGEVALGFKT VPHFSCTKRD KGTQDNQKEA  60
RSMSSKKKRA AIDLSLEAER RRPEEGGGGS DREASDGAAA AAEEDGDVKQ REGPKEETGG  120
EEEKVVEVVV DQGEDGSNEE IKYRTQQAEM IEEDKQPAAA ANVDDDGGDS DGAGASAEEK  180
HMVTEATGGE GDDGGDSRTP MAQDELSEMQ EEMERMKEEN RMLRRVVDKT VRDYYELQMK  240
LAAYQQQPAA ADEPKETEVF LSLGATAAAS AGCGGGFPEA KSKEQAAWRR RSVGSDDSDD  300
GKEDLGLSLS LGASSSYDDD QKAVEARPHD VDGAAAAAGG IASQSVNPAN RKTRVSVRVR  360
CQGPTMNDGC QWRKYGQKVA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED MSILVTTYEG  420
THNHPLPVGA TAMASTTSAA ATFMLLSSTT SSSSVSDASA APSSSYLSPY LLNSASPLLM  480
PGATGGSGGM QHLNLFGNSP SSSSLLAPQA PGSSKYPWSP NHPPLAGAGG NKRPFWSAGG  540
DGDKPAPAAL AENVGAVMSD PNKFSAAIAA AINNFMGKDG ESSSGKSSSK WGVVESLPPH  600
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22353429176WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040580.0AP004058.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1353_F08.
GenBankAP0040800.0AP004080.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1079_F11.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623937.20.0probable WRKY transcription factor 47
TrEMBLA0A0D3FAZ80.0A0A0D3FAZ8_9ORYZ; Uncharacterized protein
STRINGOBART02G34040.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.15e-50WRKY DNA-binding protein 9