PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART02G35950.1
Organism
Oryza barthii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 145aa    MW: 16272.1 Da    PI: 7.5778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART02G35950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-19756255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  OBART02G35950.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                     69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.23E-28661No hitNo description
PROSITE profilePS5103219.533769IPR001471AP2/ERF domain
PfamPF008471.8E-11755IPR001471AP2/ERF domain
SMARTSM003808.7E-33770IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-18762IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-31762IPR001471AP2/ERF domain
PRINTSPR003672.1E-11819IPR001471AP2/ERF domain
PRINTSPR003672.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRAR  60
TKLHRFNLAS VQATQRQREA AATAAAASSA SATTPPLGNA AAADDDARTT TTYGAEWSGR  120
FLEEQHVEQM IDELLDSNFS MEICY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-14659458ATERF1
3gcc_A2e-14659458ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039751e-141AP003975.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1004_E04.
GenBankAP0149581e-141AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-141CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622684.18e-77ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-44ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0D3FBL81e-103A0A0D3FBL8_9ORYZ; Uncharacterized protein
STRINGOBART02G35950.11e-103(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.13e-30ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]